ศ.ดร.อินทวัฒน์ หนูแก้ว (ศาสตราจารย์คุณวุฒิ)

  • B.E. in Engineering (Chemical Eng.), Suranaree University of Technology, Nakhon Ratchasima, Thailand
  • Ph.D. in Engineering (Chemicle Eng.), King Mongkut’s University of Technology, Thonburi, Bangkok, Thailand

Department of Biomedical Informatics, University of Arkansas for Medical Sciences 4301 W. Markham St., Slot 782 Little Rock, AR 72205

Laboratory : –

Phone : –

E-Mail : INookaew@uams.edu

ติดต่อ : –

1 Fredrik H Karlsson, Valentina Tremaroli, Intawat Nookaew, Göran Bergström, Carl Johan Behre, Björn Fagerberg, Jens Nielsen, Fredrik Bäckhed. Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature volume.
2 Fredrik H Karlsson, Frida Fåk, Intawat Nookaew, Valentina Tremaroli, Björn Fagerberg, Dina Petranovic, Fredrik Bäckhed, Jens Nielsen. Symptomatic atherosclerosis is associated with an altered gut metagenome. Nature Communications.
3 Ines Thiele, Neil Swainston, Ronan MT Fleming, Andreas Hoppe, Swagatika Sahoo, Maike K Aurich, Hulda Haraldsdottir, Monica L Mo, Ottar Rolfsson, Miranda D Stobbe, Stefan G Thorleifsson, Rasmus Agren, Christian Bölling, Sergio Bordel, Arvind K Chavali, Paul Dobson, Warwick B Dunn, Lukas Endler, David Hala, Michael Hucka, Duncan Hull, Daniel Jameson, Neema Jamshidi, Jon J Jonsson, Nick Juty, Sarah Keating,Intawat Nookaew, Nicolas Le Novère, Naglis Malys, Alexander Mazein, Jason A Papin, Nathan D Price, Evgeni Selkov Sr, Martin I Sigurdsson, Evangelos Simeonidis, Nikolaus Sonnenschein, Kieran Smallbone, Anatoly Sorokin, Johannes HGM Van Beek, Dieter Weichart, Igor Goryanin, Jens Nielsen, Hans V Westerhoff, Douglas B Kell, Pedro Mendes, Bernhard Ø Palsson A community-driven global reconstruction of human metabolism. Nature Biotechnology.
4 Miriam Land, Loren Hauser, Se-Ran Jun, Intawat Nookaew, Michael R Leuze, Tae-Hyuk Ahn, Tatiana Karpinets, Ole Lund, Guruprased Kora, Trudy Wassenaar, Suresh Poudel, David W Ussery. Insights from 20 years of bacterial genome sequencing. Functional & integrative genomics.
5 Line Pedersen, Manja Idorn, Gitte H Olofsson, Britt Lauenborg, Intawat Nookaew, Rasmus Hvass Hansen, Helle Hjorth Johannesen, Jürgen C Becker, Katrine S Pedersen, Christine Dethlefsen, Jens Nielsen, Julie Gehl, Bente K Pedersen, Per thor Straten, Pernille Hojman. Voluntary Running Suppresses Tumor Growth through Epinephrine- and IL-6-Dependent NK Cell Mobilization and Redistribution. Cell metabolism.
6 Leif Väremo, Jens Nielsen, Intawat Nookaew. Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Research.
7 Rasmus Agren, Sergio Bordel, Adil Mardinoglu, Natapol Pornputtapong, Intawat Nookaew, Jens Nielsen. Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT. PLoS computational biology.
8 Rasmus Agren, Liming Liu, Saeed Shoaie, Wanwipa Vongsangnak, Intawat Nookaew, Jens Nielsen. The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum. PLoS computational biology.
9 Erik Larsson, Valentina Tremaroli, Ying Shiuan Lee, Omry Koren, Intawat Nookaew, Ashwana Fricker, Jens Nielsen, Ruth E Ley, Fredrik Bäckhed Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut microbiota.
10 Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan MT Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout Van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales,Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith AH Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang MEMOTE for standardized genome-scale metabolic model testing. Nature biotechnology.
11 Intawat Nookaew, Marta Papini, Natapol Pornputtapong, Gionata Scalcinati, Linn Fagerberg, Matthias Uhlén, Jens Nielsen A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae. Nucleic Acids Research.
12 Saeed Shoaie, Fredrik Karlsson, Adil Mardinoglu, Intawat Nookaew, Sergio Bordel, Jens Nielsen.Understanding the interactions between bacteria in the human gut through metabolic modeling. Scientific Reports.
13 Adil Mardinoglu, Rasmus Agren, Caroline Kampf, Anna Asplund, Intawat Nookaew, Peter Jacobson, Andrew J Walley, Philippe Froguel, Lena M Carlsson, Mathias Uhlen, Jens Nielsen Integration of clinical data with a genome‐scale metabolic model of the human adipocyte. Molecular systems biology.
14 Intawat Nookaew, Michael C Jewett, Asawin Meechai, Chinae Thammarongtham, Kobkul Laoteng, Supapon Cheevadhanarak, Jens Nielsen, Sakarindr Bhumiratana The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. BMC systems biology.
15 Piroon Jenjaroenpun, Thidathip Wongsurawat, Taylor D Wadley, Trudy M Wassenaar, Jun Liu, Qing Dai, Visanu Wanchai, Nisreen S Akel, Azemat Jamshidi-Parsian, Aime T Franco, Gunnar Boysen, Michael L Jennings, David W Ussery, Chuan He,Intawat Nookaew. Decoding the epitranscriptional landscape from native RNA sequences. Nucleic acids research.
16 Felix Sommer, Intawat Nookaew, Nina Sommer, Per Fogelstrand, Fredrik Bäckhed.Site-specific programming of the host epithelial transcriptome by the gut microbiota. Genome biology.
17 Francesco Gatto, Intawat Nookaew, Jens Nielsen. Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma. Proceedings of the National Academy of Sciences.
18 Fredrik H Karlsson, David W Ussery, Jens Nielsen, Intawat Nookaew. A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut. Microbial ecology.
19 Tobias Österlund, Intawat Nookaew, Jens Nielsen. Fifteen years of large scale metabolic modeling of yeast: Developments and impacts. Biotechnology advances.
20 Tobias Österlund,Intawat Nookaew, Sergio Bordel, Jens Nielsen. Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling. BMC systems biology.
21 Luis Caspeta, Saeed Shoaie, Rasmus Agren, Intawat Nookaew, Jens Nielsen. Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. BMC systems biology.
22 Leif Väremo, Camilla Scheele, Christa Broholm, Adil Mardinoglu, Caroline Kampf, Anna Asplund, Intawat Nookaew, Mathias Uhlen, Bente Klarlund Pedersen, Jens Nielsen Proteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for DiabetesProteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for Diabetes. Cell reports.
23 Marija Cvijovic, Roberto Olivares-Hernï¿ ½ndez, Rasmus Agren, Niklas Dahr, Wanwipa Vongsangnak, Intawat Nookaew, Kiran Raosaheb Patil, Jens Nielsen. BioMet Toolbox: genome-wide analysis of metabolism. Nucleic acids research
24 Piroon Jenjaroenpun, Thidathip Wongsurawat, Rui Pereira, Preecha Patumcharoenpol, David W Ussery, Jens Nielsen, Intawat Nookaew. Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D. Nucleic acids research.
25 Sakda Khoomrung, Pramote Chumnanpuen, Suwanee Jansa-Ard, Marcus Ståhlman, Intawat Nookaew, Jan Borén, Jens Nielsen. Rapid Quantification of Yeast Lipid using Microwave-Assisted Total Lipid Extraction and HPLC-CAD. Analytical chemistry.
26 Intawat Nookaew, Per-Arne Svensson, Peter Jacobson, Margareta Jernås, Magdalena Taube, Ingrid Larsson, Johanna C Andersson-Assarsson, Lars Sjöström, Philippe Froguel, Andrew Walley, Jens Nielsen, Lena MS Carlsson. Adipose Tissue Resting Energy Expenditure and Expression of Genes Involved in Mitochondrial Function Are Higher in Women than in Men.The Journal of Clinical Endocrinology & Metabolism.
27 Ibrahim E El-Semman, Fredrik H Karlsson, Saeed Shoaie, Intawat Nookaew, Taysir H Soliman, Jens Nielsen.Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction. BMC systems biology.
28 Subazini Thankaswamy-Kosalai, Partho Sen, Intawat Nookaew. Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics. Genomics.
29 Margareta Jernås, Clas Malmeström, Markus Axelsson, Intawat Nookaew, Hans Wadenvik, Jan Lycke, Bob Olsson MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS). BMC immunology.
30 Natapol Pornputtapong, Intawat Nookaew, Jens Nielsen. Human metabolic atlas: an online resource for human metabolism. Database.
31 Se-Ran Jun, Trudy M Wassenaar, Intawat Nookaew, Loren Hauser, Visanu Wanchai, Miriam Land, Collin M Timm, Tse-Yuan S Lu, Christopher W Schadt, Mitchel J Doktycz, Dale A Pelletier, David W Ussery. Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis. Applied and Environmental Microbiology.
32 Patrick L Apopa, Lisa Alley, Rosalind B Penney, Konstantinos Arnaoutakis, Mathew A Steliga, Susan Jeffus, Emine Bircan, Banu Gopalan, Jing Jin, Preecha Patumcharoenpol, Piroon Jenjaroenpun, Thidathip Wongsurawat, Nishi Shah, Gunnar Boysen, David Ussery, Intawat Nookaew, Pebbles Fagan, Gurkan Bebek, Mohammed S Orloff. PARP1 Is Up-Regulated in Non-small Cell Lung Cancer Tissues in the Presence of the Cyanobacterial Toxin Microcystin Frontiers in microbiology
33 Marta Papini, Intawat Nookaew, Mathias Uhlén, Jens Nielsen. Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae. Microbial Cell Factories.
34 Collin M Timm, Dale A Pelletier, Sara S Jawdy, Lee E Gunter, Jeremiah A Henning, Nancy Engle, Jayde Aufrecht, Emily Gee, Intawat Nookaew, Zamin Yang, Tse-Yuan Lu, Timothy J Tschaplinski, Mitchel J Doktycz, Gerald A Tuskan, David J Weston. Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System. Frontiers in plant science.
35 Collin M Timm, Kelsey R Carter, Alyssa A Carrell, Se-Ran Jun, Sara S Jawdy, Jessica M Vélez, Lee E Gunter, Zamin Yang, Intawat Nookaew, Nancy L Engle, Tse-Yuan S Lu, Christopher W Schadt, Timothy J Tschaplinski, Mitchel J Doktycz, Gerald A Tuskan, Dale A Pelletier, David J Weston.Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome. MSystems.
36 Christoph Knuf, Intawat Nookaew, Stephen H Brown, Michael McCulloch, Alan Berry, Jens Nielsen. Investigation of Malic Acid Production in Aspergillus oryzae under Nitrogen Starvation Conditions. Applied and Environmental Microbiology.
37 Fredrik H Karlsson,Intawat Nookaew, Dina Petranovic, Jens Nielsen. Prospects for systems biology and modeling of the gut microbiome. Trends in biotechnology.
38 Kaisa Thorell, Johan Bengtsson-Palme, Oscar Hsin-Fu Liu, Reyna Victoria Palacios Gonzales, Intawat Nookaew, Linda Rabeneck, Lawrence Paszat, David Y Graham, Jens Nielsen, Samuel B Lundin, Åsa Sjöling. In Vivo Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis  Infection and immunity.
39 Thidathip Wongsurawat, Niracha Athipanyasilp, Piroon Jenjaroenpun, Se-Ran Jun, Bualan Kaewnapan, Trudy M Wassenaar, Nattawat Leelahakorn, Nasikarn Angkasekwinai, Wannee Kantakamalakul, David W Ussery, Ruengpung Sutthent, Intawat Nookaew, Navin Horthongkham. Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand. Emerging infectious diseases.
40 Sakda Khoomrung, Pramote Chumnanpuen, Suwanee Jansa-Ard,Intawat Nookaew, Jens Nielsen. Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae. Applied Microbiology and Biotechnology.
41 Ha-Neui Kim, Filipa Ponte, Intawat Nookaew, Serra Ucer Ozgurel, Adriana Marques-Carvalho, Srividhya Iyer, Aaron Warren, Nukhet Aykin-Burns, Kimberly Krager, Vilma A Sardao, Li Han, Rafael de Cabo, Haibo Zhao, Robert L Jilka, Stavros C Manolagas, Maria Almeida. Estrogens decrease osteoclast number by attenuating mitochondria oxidative phosphorylation and ATP production in early osteoclast precursors. Scientific reports.
42 Katty VY Goossens, Francesco S Ielasi, Intawat Nookaew, Ingeborg Stals, Livan Alonso-Sarduy, Luk Daenen, Sebastiaan E Van Mulders, Catherine Stassen, Rudy GE Van Eijsden, Verena Siewers, Freddy R Delvaux, Sandor Kasas, Jens Nielsen, Bart Devreese, Ronnie G Willaert. Molecular Mechanism of Flocculation Self-Recognition in Yeast and Its Role in Mating and Survival. MBio
43 Fredrik H Karlsson, Intawat Nookaew, Jens Nielsen. Metagenomic Data Utilization and Analysis (MEDUSA) and Construction of a Global Gut Microbial Gene Catalogue. PLoS computational biology.
44 Christoph Knuf,Intawat Nookaew, Ilse Remmers, Sakda Khoomrung, Stephen Brown, Alan Berry, Jens Nielsen Physiological Characterization of the High Malic Acid-Producing Aspergillus oryzae Strain 2103a-68. Applied microbiology and biotechnology.
45 Petia Kovatcheva-Datchary, Saeed Shoaie, Sunjae Lee, Annika Wahlström, Intawat Nookaew, Anna Hallen, Rosie Perkins, Jens Nielsen, Fredrik Bäckhed. Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model. Cell reports.
46 Thidathip Wongsurawat, Piroon Jenjaroenpun, Mariah K Taylor, Jasper Lee, Aline Lavado Tolardo, Jyothi Parvathareddy, Sangam Kandel, Taylor D Wadley, Bualan Kaewnapan, Niracha Athipanyasilp, Andrew Skidmore, Donghoon Chung, Chutikarn Chaimayo, Michael Whitt, Wannee Kantakamalakul, Ruengpung Sutthent, Navin Horthongkham, David W Ussery, Colleen B Jonsson, Intawat Nookaew. Rapid Sequencing of Multiple RNA Viruses in Their Native Form. Frontiers in microbiology.
47 Tammi Vesth, Aslı Ozen, Sandra C Andersen, Rolf Sommer Kaas, Oksana Lukjancenko, Jon Bohlin, Intawat Nookaew, Trudy M Wassenaar, David W Ussery. Veillonella, Firmicutes: Microbes disguised as Gram negatives. Standards in genomic sciences.
48 Se-Ran Jun, Michael R Leuze, Intawat Nookaew, Edward C Uberbacher, Miriam Land, Qian Zhang, Visanu Wanchai, Juanjuan Chai, Morten Nielsen, Thomas Trolle, Ole Lund, Gregory S Buzard, Thomas D Pedersen, Trudy M Wassenaar, David W Ussery. Ebolavirus comparative genomics. FEMS microbiology reviews.
49 Intawat Nookaew, Kaisa Thorell, Kuntal Worah, Shugui Wang, Martin Lloyd Hibberd, Henrik Sjövall, Sven Pettersson, Jens Nielsen, Samuel B Lundin. Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker.  BMC medical genomics.
50 Margareta Jernås, Intawat Nookaew, Hans Wadenvik, Bob Olsson. MicroRNA regulate immunological pathways in T-cells in immune thrombocytopenia (ITP). Blood, The Journal of the American Society of Hematology.
51 Nipa Chokesajjawatee, Pannita Santiyanont, Kanittha Chantarasakha, Kanokarn Kocharin, Chinae Thammarongtham, Supatcha Lertampaiporn, Tayvich Vorapreeda, Tanawut Srisuk, Thidathip Wongsurawat, Piroon Jenjaroenpun, Intawat Nookaew, Wonnop Visessanguan. Safety Assessment of a Nham Starter Culture Lactobacillus plantarum BCC9546 via Whole-genome Analysis. Scientific reports.
52 Qian Zhang, Se-Ran Jun, Michael Leuze, David Ussery,Intawat Nookaew. Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer. Scientific reports.
53 Tanaporn Uengwetwanit, Wirulda Pootakham, Intawat Nookaew, Chutima Sonthirod, Pacharaporn Angthong, Kanchana Sittikankaew, Wanilada Rungrassamee, Sopacha Arayamethakorn, Thidathip Wongsurawat, Piroon Jenjaroenpun, Duangjai Sangsrakru, Rungnapa Leelatanawit, Jutatip Khudet, Jasper J Koehorst, Peter J Schaap, Vitor Martins dos Santos, Frédéric Tangy, Nitsara Karoonuthaisiri. A chromosome-level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth-associated genes. Molecular ecology resources.
54 Manuel Garcia-Albornoz, Subazini Thankaswamy-Kosalai, Avlant Nilsson, Leif Väremo, Intawat Nookaew, Jens Nielsen. BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data. Nucleic acids research.
55 Leif Väremo, Intawat Nookaew, Jens Nielsen. Novel insights into obesity and diabetes through genome-scale metabolic modeling. Frontiers in physiology.
56 Francesco Gatto, Nicola Volpi, Helen Nilsson, Intawat Nookaew, Marco Maruzzo, Anna Roma, Martin E Johansson, Ulrika Stierner, Sven Lundstam, Umberto Basso, Jens Nielsen Glycosaminoglycan Profiling in Patients’ Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma. Cell reports.
57 Thorunn A Olafsdottir, Madelene Lindqvist, Intawat Nookaew, Peter Andersen, Jeroen Maertzdorf, Josefine Persson, Dennis Christensen, Yuan Zhang, Jenna Anderson, Sakda Khoomrung, Partho Sen, Else Marie Agger, Rhea Coler, Darrick Carter, Andreas Meinke, Rino Rappuoli, Stefan HE Kaufmann, Steven G Reed, Ali M Harandi. Comparative Systems Analyses Reveal Molecular Signatures of Clinically tested Vaccine Adjuvants. Scientific reports.
58 Jeffrey V Zurawski, Jonathan M Conway, Laura L Lee, Hunter J Simpson, Javier A Izquierdo, Sara Blumer-Schuette, Intawat Nookaew, Michael WW Adams, Robert M Kelly. Comparative Analysis of Extremely Thermophilic Caldicellulosiruptor Species Reveals Common and Unique Cellular Strategies for Plant Biomass Utilization. Applied and Environmental Microbiology.
59 Surapun Tepaamorndech,Intawat Nookaew, Shawn M Higdon, Pannita Santiyanont, Metavee Phromson, Kanittha Chantarasakha, Wuttichai Mhuantong, Vetthachai Plengvidhya, Wonnop Visessanguan. Metagenomics in bioflocs and their effects on gut microbiome and immune responses in Pacific white shrimp. Fish & shellfish immunology.
60 Margareta Jernås, Yu Hou, Frida Strömberg Célind, Linlin Shao,Intawat Nookaew, Qian Wang, Xiuli Ju, Karin Mellgren, Hans Wadenvik, Ming Hou, Bob Olsson. Differences in gene expression and cytokine levels between newly diagnosed and chronic pediatric ITP. Blood, The Journal of the American Society of Hematology.
61 Kemal Sanli, Fredrik H Karlsson, Intawat Nookaew, Jens Nielsen. FANTOM: Functional and taxonomic analysis of metagenomes. BMC bioinformatics.
62 Marta Papini, Intawat Nookaew, Verena Siewers, Jens Nielsen. Physiological characterization of recombinant Saccharomyces cerevisiae expressing the Aspergillus nidulans phosphoketolase pathway: validation of activity through 13C-based metabolic flux analysis. Applied microbiology and biotechnology.
63 Rasmus Amund Henriksen, Piroon Jenjaroenpun, Ida Borup Sjøstrøm, Kristian Reveles Jensen, Iñigo Prada-Luengo, Thidathip Wongsurawat, Intawat Nookaew, Birgitte Regenberg. Circular DNA in the human germline and its association with recombination. Molecular cell.
64 Aniket Jana,Intawat Nookaew, Jugroop Singh, Bahareh Behkam, Aime T Franco, Amrinder S Nain. Crosshatch nanofiber networks of tunable interfiber spacing induce plasticity in cell migration and cytoskeletal response. The FASEB Journal.
65 Ahmed Hussain, Intawat Nookaew, Sakda Khoomrung, L Andersson, Ingrid Larsson, Lena Hulthén, Nina Jansson, Robert Jakubowicz, Staffan Nilsson, A‐S Sandberg, J Nielsen, Agneta Holmäng. A maternal diet of fatty fish reduces body fat of offspring compared with a maternal diet of beef and a post-weaning diet of fish improves insulin sensitivity and lipid profile in adult C57BL/6 male mice. Acta Physiologica.
66 Suresh Poudel, Richard J Giannone, Miguel Rodriguez, Babu Raman, Madhavi Z Martin, Nancy L Engle, Jonathan R Mielenz, Intawat Nookaew, Steven D Brown, Timothy J Tschaplinski, David Ussery, Robert L Hettich. Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass. Biotechnology for biofuels.
67 Jiaxu Wang, Piroon Jenjaroenpun, Akshay Bhinge, Vladimir Espinosa Angarica, Antonio Del Sol, Intawat Nookaew, Vladimir A Kuznetsov, Lawrence W Stanton. Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons. Genome research.
68 Sara L Svahn, Louise Grahnemo, Vilborg Pálsdóttir,Intawat Nookaew, Karl Wendt, Britt Gabrielsson, Erik Schéle, Anna Benrick, Niklas Andersson, Staffan Nilsson, Maria E Johansson, John-Olov Jansson. Dietary Polyunsaturated Fatty Acids Increase Survival and Decrease Bacterial Load during Septic Staphylococcus aureus Infection and Improve Neutrophil Function in Mice. Infection and immunity.
69 Nikul K Soni, Intawat Nookaew, Ann-Sofie Sandberg, Britt G Gabrielsson. Eicosapentaenoic and docosahexaenoic acid-enriched high fat diet delays the development of fatty liver in mice. Lipids in health and disease.
70 Intawat Nookaew, Asawin Meechai, Chinae Thammarongtham, Kobkul Laoteng, Vasimon Ruanglek, Supapon Cheevadhanarak, Jens Nielsen, Sakarindr Bhumiratana. Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks. Biotechnology and bioengineering.
71 Nikul Soni, Alastair B Ross, Nathalie Scheers, Intawat Nookaew, Britt G Gabrielsson, Ann-Sofie Sandberg. The Omega-3 Fatty Acids EPA and DHA, as a Part of a Murine High-Fat Diet, Reduced Lipid Accumulation in Brown and White Adipose Tissues. International Journal of Molecular Sciences.
72 R Adam Thompson, Sanjeev Dahal, Sergio Garcia, Intawat Nookaew, Cong T Trinh. Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome. Biotechnology for biofuels.
73 Fei Sjöberg, Cecilia Barkman, Intawat Nookaew, Sofia Östman, Ingegerd Adlerberth, Robert Saalman, Agnes E Wold. Low-complexity microbiota in the duodenum of children with newly diagnosed ulcerative colitis. PLoS One.
74 Sakda Khoomrung, Kwanjeera Wanichthanarak, Intawat Nookaew, Onusa Thamsermsang, Patcharamon Seubnooch, Tawee Laohapand, Pravit Akarasereenont. Metabolomics and Integrative Omics for the Development of Thai Traditional Medicine. Frontiers in pharmacology.
75 Thidathip Wongsurawat, Chin Cheng Woo, Antonis Giannakakis, Xiao Yun Lin, Esther Sok Hwee Cheow, Chuen Neng Lee, Mark Richards, Siu Kwan Sze, Intawat Nookaew, Vladimir A Kuznetsov, Vitaly Sorokin. Distinctive molecular signature and activated signaling pathways in aortic smooth muscle cells of patients with myocardial infarction. Atherosclerosis.
76 Chinae Thammarongtham, Intawat Nookaew, Tayvich Vorapreeda, Tanawut Srisuk, Miriam L Land, Sukanya Jeennor, Kobkul Laoteng. Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production. Current microbiology.
77 Samir V Jenkins, Kieng B Vang, Allen Gies, Robert J Griffin, Se-Ran Jun, Intawat Nookaew, Ruud PM Dings. Sample storage conditions induce post-collection biases in microbiome profiles. BMC microbiology.
78 Narueporn Likhitweerawong, Chanisa Thonusin, Nonglak Boonchooduang, Orawan Louthrenoo, Intawat Nookaew, Nipon Chattipakorn, Siriporn C Chattipakorn. Profiles of urine and blood metabolomics in autism spectrum disorders. Metabolic brain disease.
79 Ryan S MacLeod, Keisha M Cawley, Igor Gubrij, Intawat Nookaew, Melda Onal, Charles A O’Brien. Effective CRISPR interference of an endogenous gene via a single transgene in mice.Scientific Reports.
80 Thidathip Wongsurawat, Piroon Jenjaroenpun, Annick De Loose, Duah Alkam, David W Ussery, Intawat Nookaew, Yuet-Kin Leung, Shuk-Mei Ho, John D Day, Analiz Rodriguez. A novel Cas9-targeted long-read assay for simultaneous detection of IDH1/2 mutations and clinically relevant MGMT methylation in fresh biopsies of diffuse glioma. Acta Neuropathologica Communications.
81 Thomas Lin Pedersen, Intawat Nookaew, David Wayne Ussery, Maria Månsson. PanViz: interactive visualization of the structure of functionally annotated pangenomes. Bioinformatics.
82 Charles M Skinner, Intawat Nookaew, Laura E Ewing, Thidathip Wongsurawat, Piroon Jenjaroenpun, Charles M Quick, Eric U Yee, Brian D Piccolo, Mahmoud ElSohly, Larry A Walker, Bill Gurley, Igor Koturbash. Potential Probiotic or Trigger of Gut Inflammation – The Janus-Faced Nature of Cannabidiol-Rich Cannabis Extract. Journal of dietary supplements.
83 Pramote Chumnanpuen, Intawat Nookaew, Jens Nielsen. Integrated analysis, transcriptome-lipidome, reveals the effects of INO- level (INO2 and INO4) on lipid metabolism in yeast. BMC Systems Biology.
84 Hardis Rabe, Anna-Carin Lundell, Fei Sjöberg, Annika Ljung, Anna Strömbeck, Monica Gio-Batta, Cristina Maglio, Inger Nordström, Kerstin Andersson, Intawat Nookaew, Agnes E Wold, Ingegerd Adlerberth, Anna Rudin. Neonatal gut colonization by Bifidobacterium is associated with higher childhood cytokine responses. Gut Microbes.
85 Kanchana Sittikankaew, Wirulda Pootakham, Chutima Sonthirod, Duangjai Sangsrakru, Thippawan Yoocha, Jutatip Khudet, Intawat Nookaew, Umaporn Uawisetwathana, Wanilada Rungrassamee, Nitsara Karoonuthaisiri. Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp. Scientific Reports.
86 Kaisa Thorell, Shaghayegh Hosseini, Reyna Victoria Palacios Palacios Gonzales, Chatchai Chaotham, David Y Graham, Lawrence Paszat, Linda Rabeneck, Samuel B Lundin, Intawat Nookaew, Åsa Sjöling. Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua. BMC Evolutionary Biology.
87 Chin Cheng Woo, Wenting Liu, Xiao Yun Lin, Rajkumar Dorajoo, Kee Wah Lee, A Mark Richards, Chuen Neng Lee, Thidathip Wongsurawat, Intawat Nookaew, Vitaly Sorokin. The Interaction between 30b-5p miRNA and MBNL1 mRNA is Involved in Vascular Smooth Muscle Cell Differentiation in Patients with Coronary Atherosclerosis. International journal of molecular sciences.
88 Intawat Nookaew, Roberto Olivares-Hernández, Sakarindr Bhumiratana, Jens Nielsen. Genome-Scale Metabolic Models of Saccharomyces cerevisiae. Yeast Systems Biology: Methods and Protocols.
89 Bill J Gurley, Isabelle R Miousse, Intawat Nookaew, Laura E Ewing, Charles M Skinner, Piroon Jenjaroenpun, Thidathip Wongsurawat, Stefanie Kennon-McGill, Bharathi Avula, Ji-Yeong Bae, Mitchell R McGill, David Ussery, Ikhlas A Khan, Igor Koturbash. Decaffeinated Green Tea Extract Does Not Elicit Hepatotoxic Effects and Modulates the Gut Microbiome in Lean B6C3F1 Mice. Nutrients.
90 Enrique Joffre, Matilda Nicklasson, Sandra Álvarez-Carretero, Xue Xiao, Lei Sun,Intawat Nookaew, Baoli Zhu, Åsa Sjöling. The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli. Scientific reports.
91 Pramote Chumnanpuen, Jie Zhang, Intawat Nookaew, Jens Nielsen. Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol–choline and Snf1 in controlling lipid biosynthesis in yeast. Molecular genetics and genomics.
92 Madelene Lindqvist, Intawat Nookaew, Ingrid Brinkenberg, Emma Samuelson, Karolina Thörn, Jens Nielsen, Ali M Harandi. Unraveling Molecular Signatures of Immunostimulatory Adjuvants in the Female Genital Tract through Systems Biology. PloS one.
93 Pacharaporn Angthong, Tanaporn Uengwetwanit, Wirulda Pootakham, Kanchana Sittikankaew, Chutima Sonthirod, Duangjai Sangsrakru, Thippawan Yoocha, Intawat Nookaew, Thidathip Wongsurawat, Piroon Jenjaroenpun, Wanilada Rungrassamee, Nitsara Karoonuthaisiri. Optimization of high molecular weight DNA extraction methods in shrimp for a long-read sequencing platform. PeerJ.
94 Brian D Piccolo, James L Graham, Kimber L Stanhope, Intawat Nookaew, Kelly E Mercer, Sree V Chintapalli, Umesh D Wankhade, Kartik Shankar, Peter J Havel, Sean H Adams. Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model. American Journal of Physiology-Endocrinology and Metabolism.
95 Se-Ran Jun, Trudy M Wassenaar, Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, David W Ussery. Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?. Bmc Bioinformatics.
96 Michael C Jewett, Christopher T Workman, Intawat Nookaew, Francisco A Pizarro, Eduardo Agosin, Lars I Hellgren, Jens Nielsen. Mapping Condition-Dependent Regulation of Lipid Metabolism in Saccharomyces cerevisiae. G3: Genes, Genomes, Genetics.
97 Nikul K Soni, Alastair B Ross, Nathalie Scheers, Otto I Savolainen, Intawat Nookaew, Britt G Gabrielsson, Ann-Sofie Sandberg. Splenic Immune Response Is Down-Regulated in C57BL/6J Mice Fed Eicosapentaenoic Acid and Docosahexaenoic Acid Enriched High Fat Diet. Nutrients.
98 Sara L Svahn, Saray Gutiérrez, Marcus A Ulleryd, Intawat Nookaew, Veronica Osla, Fredrik Beckman, Staffan Nilsson, Anna Karlsson, John-Olov Jansson, Maria E Johansson. Dietary Polyunsaturated Fatty Acids Promote Neutrophil Accumulation in the Spleen by Altering Chemotaxis and Delaying Cell Death. Infection and Immunity.
99 Intawat Nookaew, Britt G Gabrielsson, Agneta Holmäng, Ann-Sofie Sandberg, Jens Nielsen. Identifying Molecular Effects of Diet through Systems Biology: Influence of Herring Diet on Sterol Metabolism and Protein Turnover in Mice. PLoS One.
100 Visanu Wanchai, Piroon Jenjaroenpun, Thongpan Leangapichart, Gerard Arrey, Charles M Burnham, Maria C Tümmler, Jesus Delgado-Calle, Birgitte Regenberg, Intawat Nookaew. CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences. Briefings in Bioinformatics.
101 Michela Palmieri, Maria Almeida, Intawat Nookaew, Horacio Gomez‐Acevedo, Teenamol E Joseph, Xuchu Que, Sotirios Tsimikas, Xiaoli Sun, Stavros C Manolagas, Joseph L Witztum, Elena Ambrogini. Neutralization of oxidized phospholipids attenuates age-associated bone loss in mice. Aging Cell.
102 Mariah K Taylor, Evan P Williams, Thidathip Wongsurawat, Piroon Jenjaroenpun, Intawat Nookaew, Colleen B Jonsson. Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species. Frontiers in Cellular and Infection Microbiology.
103 Intawat Nookaew, Piroon Jenjaroenpun, Hua Du, Pengcheng Wang, Jun Wu, Thidathip Wongsurawat, Sun Hee Moon, En Huang, Yinsheng Wang, Gunnar Boysen. Detection and Discrimination of DNA Adducts Differing in Size, Regiochemistry, and Functional Group by Nanopore Sequencing. Chemical research in toxicology.
104 Sara L Svahn, Leif Väremo, Britt G Gabrielsson, Eduard Peris, Intawat Nookaew, Louise Grahnemo, Ann-Sofie Sandberg, Ingrid Wernstedt Asterholm, John-Olov Jansson, Jens Nielsen, Maria E Johansson. Six Tissue Transcriptomics Reveals Specific Immune Suppression in Spleen by Dietary Polyunsaturated Fatty Acids. PLoS One.
105 Zulema Udaondo, Kanchana Sittikankaew, Tanaporn Uengwetwanit, Thidathip Wongsurawat, Chutima Sonthirod, Piroon Jenjaroenpun, Wirulda Pootakham, Nitsara Karoonuthaisiri, Intawat Nookaew. Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon. Life.
106 Pattapon Kunadirek, Natthaya Chuaypen, Piroon Jenjaroenpun, Thidathip Wongsurawat, Nutcha Pinjaroen, Pongserath Sirichindakul, Intawat Nookaew, Pisit Tangkijvanich. Cell-Free DNA Analysis by Whole-Exome Sequencing for Hepatocellular Carcinoma: A Pilot Study in Thailand. Cancers.
107 Natapol Pornputtapong, Daniel A Acheampong, Preecha Patumcharoenpol, Piroon Jenjaroenpun, Thidathip Wongsurawat, Se-Ran Jun, Suganya Yongkiettrakul, Nipa Chokesajjawatee, Intawat Nookaew. KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis. Frontiers in bioengineering and biotechnology.
108 Suresh Poudel, Richard J Giannone, Mirko Basen, Intawat Nookaew, Farris L Poole, Robert M Kelly, Michael WW Adams, Robert L Hettich. The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate. Biotechnology for biofuels.
109 Piroon Jenjaroenpun, Visanu Wanchai, Kikumi D Ono-Moore, Jennifer Laudadio, Laura P James, Sean H Adams, Fred Prior, Intawat Nookaew, David W Ussery, Thidathip Wongsurawat. Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing. Microbiology resource announcements.
110 Thidathip Wongsurawat, Mayumi Nakagawa, Omar Atiq, Hannah N Coleman, Piroon Jenjaroenpun, James I Allred, Angela Trammel, Pantakan Puengrang, David W Ussery, Intawat Nookaew. An assessment of Oxford Nanopore sequencing for human gut metagenome profiling: A pilot study of head and neck cancer patients. Journal of microbiological methods.
111 Thidathip Wongsurawat, Chin Cheng Woo, Antonis Giannakakis, Xiao Yun Lin, Esther Sok Hwee Cheow, Chuen Neng Lee, Mark Richards, Siu Kwan Sze, Intawat Nookaew, Vladimir A Kuznetsov, Vitaly Sorokin. Transcriptome alterations of vascular smooth muscle cells in aortic wall of myocardial infarction patients. Data in brief.
112 Nikul K Soni, Alastair B Ross, Nathalie Scheers, Otto I Savolainen, Intawat Nookaew, Britt G Gabrielsson, Ann-Sofie Sandberg. Eicosapentaenoic and Docosahexaenoic Acid-Enriched High Fat Diet Delays Skeletal Muscle Degradation in Mice. Nutrients.
113 Marta Papini, Intawat Nookaew, Gionata Scalcinati, Verena Siewers, Jens Nielsen. Phosphoglycerate mutase knock-out mutant Saccharomyces cerevisiae: Physiological investigation and transcriptome analysis. Biotechnology Journal.
114 Qiang Fu, Nancy C Bustamante-Gomez, Humberto Reyes-Pardo, Igor Gubrij, Diana Escalona-Vargas, Jeff D Thostenson, Michela Palmieri, Joseph J Goellner, Intawat Nookaew, C Lowry Barnes, Jeffrey B Stambough, Elena Ambrogini, Charles A O’Brien. Reduced osteoprotegerin expression by osteocytes may contribute to rebound resorption after denosumab discontinuation. JCI insight.
115 Dongzheng Gai, Jin-Ran Chen, James P Stewart, Intawat Nookaew, Hasem Habelhah, Cody Ashby, Fumou Sun, Yan Cheng, Can Li, Hongwei Xu, Bailu Peng, Tarun K Garg, Carolina Schinke, Sharmilan Thanendrarajan, Maurizio Zangari, Fangping Chen, Bart Barlogie, Frits van Rhee, Guido Tricot, John D Shaughnessy, Fenghuang Zhan. CST6 suppresses osteolytic bone disease in multiple myeloma by blocking osteoclast differentiation. The Journal of clinical investigation.
116 Dmitry A Rodionov, Irina A Rodionova, Vladimir A Rodionov, Aleksandr A Arzamasov, Ke Zhang, Gabriel M Rubinstein, Tania NN Tanwee, Ryan G Bing, James R Crosby, Intawat Nookaew, Mirko Basen, Steven D Brown, Charlotte M Wilson, Dawn M Klingeman, Farris L Poole, Ying Zhang, Robert M Kelly, Michael WW Adams. Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii. Msystems.
117 Umaporn Uawisetwathana, Olivier P Chevallier, Yun Xu, Wintai Kamolsukyeunyong, Intawat Nookaew, Thapakorn Somboon, Theerayut Toojinda, Apichart Vanavichit, Royston Goodacre, Christopher T Elliott, Nitsara Karoonuthaisiri. Global metabolite profiles of rice brown planthopper-resistant traits reveal potential secondary metabolites for both constitutive and inducible defenses. Metabolomics.
118 Silvia Marino, Nisreen Akel, Shenyang Li, Meloney Cregor, Meghan Jones, Betiana Perez, Gaston Troncoso, Jomeeka Meeks, Scott Stewart, Amy Y Sato, Intawat Nookaew, Teresita Bellido. Reversal of the diabetic bone signature with anabolic therapies in mice. Bone Research.
119 Duah Alkam, Piroon Jenjaroenpun, Thidathip Wongsurawat, Zulema Udaondo, Preecha Patumcharoenpol, Michael Robeson, Dirk Haselow, William Mason, Intawat Nookaew, David Ussery, Se-Ran Jun. Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. Infection, Genetics and Evolution.
120 Thoranin Intarajak, Wandee Udomchaiprasertkul, Chakrit Bunyoo, Jutamas Yimnoon, Kamonwan Soonklang, Kriangpol Wiriyaukaradecha, Wisut Lamlertthon, Thaniya Sricharunrat, Worawit Chaiwiriyawong, Bunchorn Siriphongpreeda, Sawannee Sutheeworapong, Kanthida Kusonmano, Weerayuth Kittichotirat, Chinae Thammarongtham, Piroon Jenjaroenpun, Thidathip Wongsurawat, Intawat Nookaew, Chirayu Auewarakul, Supapon Cheevadhanarak. Genetic Aberration Analysis in Thai Colorectal Adenoma and Early-Stage Adenocarcinoma Patients by Whole-Exome Sequencing. Cancers.
121 Roger Karlsson, Kaisa Thorell, Shaghayegh Hosseini, Diarmuid Kenny, Carina Sihlbom, Åsa Sjöling, Anders Karlsson, Intawat Nookaew. Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics. Frontiers in Microbiology.
122 Kwanjeera Wanichthanarak, Intawat Nookaew, Dina Petranovic. yStreX: yeast stress expression database. Database.
123 Rafiou Agoro, Intawat Nookaew, Megan L Noonan, Yamil G Marambio, Sheng Liu, Wennan Chang, Hongyu Gao, Lainey M Hibbard, Corinne E Metzger, Daniel Horan, William R Thompson, Xiaoling Xuei, Yunlong Liu, Chi Zhang, Alexander G Robling, Lynda F Bonewald, Jun Wan, Kenneth E White. Single cell cortical bone transcriptomics define novel osteolineage gene sets altered in chronic kidney disease. Frontiers in endocrinology.
124 Adriana Cabal, Se-Ran Jun, Piroon Jenjaroenpun, Visanu Wanchai, Intawat Nookaew, Thidathip Wongsurawat, Mary J Burgess, Atul Kothari, Trudy M Wassenaar, David W Ussery. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. Microbial Ecology.
125 Thidathip Wongsurawat, Piroon Jenjaroenpun, Niracha Athipanyasilp, Bualan Kaewnapan, Nattawat Leelahakorn, Nasikarn Angkasekwinai, Wannee Kantakamalakul, Ruengpung Sutthent, David W Ussery, Navin Horthongkham, Intawat Nookaew. Genome Sequences of Zika Virus Strains Recovered from Amniotic Fluid, Placenta, and Fetal Brain of a Microcephaly Patient in Thailand, 2017. Microbiology Resource Announcements.
126 CM Timm, KR Carter, AA Carrell, SR Jun, SS Jawdy, JM Vélez, LE Gunter, Z Yang, Intawat Nookaew, NL Engle, TYS Lu, CW Schadt, TJ Tschaplinski, MJ Doktycz, GA Tuskan, DA Pelletier, DJ Weston. Abiotic stresses shift belowground Populus-associated bacteria toward a core stress microbiome. mSystems 3: e00070-17. DOI.
127 Pattapon Kunadirek, Nutcha Pinjaroen, Intawat Nookaew, Pisit Tangkijvanich, Natthaya Chuaypen. Transcriptomic Analyses Reveal Long Non-Coding RNA in Peripheral Blood Mononuclear Cells as a Novel Biomarker for Diagnosis and Prognosis of Hepatocellular Carcinoma. International Journal of Molecular Sciences.
128 Suganya Yongkiettrakul, Thidathip Wongsurawat, Piroon Jenjaroenpun, Daniel A Acheampong, Potjanee Srimanote, Krissana Maneerat, Wonnop Visessanguan, Intawat Nookaew. Genome sequences of antibiotic-resistant Streptococcus suis strains isolated from human patients and diseased and asymptomatic pigs in Thailand. Infection, Genetics and Evolution.
129 Pattsarun Cheawchanlertfa, Sawannee Sutheeworapong, Piroon Jenjaroenpun, Thidathip Wongsurawat, Intawat Nookaew, Supapon Cheevadhanarak, Akihiko Kosugi, Patthra Pason, Rattiya Waeonukul, Khanok Ratanakhanokchai, Chakrit Tachaapaikoon. Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes. PeerJ.
130 Margareta Jernås, Intawat Nookaew, Hans Wadenvik, Bob Olsson. Differential expression of T-cell genes in blood and bone marrow between ITP patients and controls. Thrombosis and haemostasis.
131 Kwanjeera Wanichthanarak, Intawat Nookaew, Phongthana Pasookhush, Thidathip Wongsurawat, Piroon Jenjaroenpun, Namkhang Leeratsuwan, Songsak Wattanachaisaereekul, Wonnop Visessanguan, Yongyut Sirivatanauksorn, Narong Nuntasaen, Chutima Kuhakarn, Vichai Reutrakul, Pravech Ajawatanawong, Sakda Khoomrung. Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae. BMC Plant Biology.
132 Xuehua Li, Jacob Kordsmeier, Intawat Nookaew, Ha-Neui Kim, Jinhu Xiong. Piezo1 stimulates mitochondrial function via cAMP signaling. FASEB journal: official publication of the Federation of American Societies for Experimental Biology.
133 Suphitcha Limjiasahapong, Khwanta Kaewnarin, Narumol Jariyasopit, Sakchai Hongthong, Narong Nuntasaen, Jonathan L Robinson, Intawat Nookaew, Yongyut Sirivatanauksorn, Chutima Kuhakarn, Vichai Reutrakul, Sakda Khoomrung. UPLC-ESI-MRM/MS for Absolute Quantification and MS/MS Structural Elucidation of Six Specialized Pyranonaphthoquinone Metabolites From Ventilago harmandiana. Frontiers in plant science.
134 Thidathip Wongsurawat, Arundhati Gupta, Piroon Jenjaroenpun, Shana Owens, James Craig Forrest, Intawat Nookaew. R-loop-forming Sequences Analysis in Thousands of Viral Genomes Identify A New Common Element in Herpesviruses. Scientific reports.
135 Margareta Jernås, Clas Malmeström, Markus Axelsson, Caroline Olsson, Intawat Nookaew, Hans Wadenvik, Henrik Zetterberg, Kaj Blennow, Jan Lycke, Mats Rudemo, Bob Olsson. MS risk genes are transcriptionally regulated in CSF leukocytes at relapse. Multiple Sclerosis Journal.
136 Enrique Joffré, Xue Xiao, Mário SP Correia, Intawat Nookaew, Samantha Sasse, Daniel Globisch, Baoli Zhu, Åsa Sjöling. Analysis of Growth Phases of Enterotoxigenic Escherichia coli Reveals a Distinct Transition Phase before Entry into Early Stationary Phase with Shifts in Tryptophan, Fucose, and Putrescine Metabolism and Degradation of Neurotransmitter Precursors. Microbiology Spectrum.
137 Hayley M Sabol, Tania Amorim, Cody Ashby, David Halladay, Judith Anderson, Meloney Cregor, Megan Sweet, Intawat Nookaew, Noriyoshi Kurihara, G David Roodman, Teresita Bellido, Jesus Delgado-Calle. Notch3 signaling between myeloma cells and osteocytes in the tumor niche promotes tumor growth and bone destructions. Neoplasia.
138 Thidathip Wongsurawat, Piroon Jenjaroenpun, Visanu Wanchai, Intawat Nookaew. Native RNA or cDNA Sequencing for Transcriptomic Analysis: A Case Study on Saccharomyces cerevisiae. Frontiers in Bioengineering and Biotechnology.
139 Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, David Ussery. dBBQs: dataBase of Bacterial Quality scores. BMC bioinformatics.
140 Se-Ran Jun, Intawat Nookaew, Loren Hauser, Andrey Gorin. Assessment of genome annotation using gene function similarity within the gene neighborhood. BMC bioinformatics.
141 Filipa Ponte, Ha-Neui Kim, Aaron Warren, Srividhya Iyer, Li Han, Erin Mannen, Horacio Gomez-Acevedo, Intawat Nookaew, Maria Almeida, Stavros C Manolagas. Mmp13 deletion in mesenchymal cells increases bone mass and may attenuate the cortical bone loss caused by estrogen deficiency. Scientific Reports.
142 L Nguy, E Shubbar, Margareta Jernås, Intawat Nookaew, J Lundgren, B Olsson, H Nilsson, G Guron. Adenine-induced chronic renal failure in rats decreases aortic relaxation rate and alters expression of proteins involved in vascular smooth muscle calcium handling. Acta Physiologica.
143 Gunnar Boysen, Intawat Nookaew. Current and Future Methodology for Quantitation and Site-Specific Mapping the Location of DNA Adducts. Toxics.
144 Natthaya Chuaypen, Thananya Jinato, Anchalee Avihingsanon, Sakkarin Chirapongsathorn, Supapon Cheevadhanarak, Intawat Nookaew, Yasuhito Tanaka, Pisit Tangkijvanich. Improvement of Gut Diversity and Composition After Direct-Acting Antivirals in Hepatitis C Virus–Infected Patients With or Without Human Immunodeficiency Virus Coinfection. The Journal of Infectious Diseases.
145 Fei Sjöberg, Intawat Nookaew, Shora Yazdanshenas, Monica Gio-Batta, Ingegerd Adlerberth, Agnes E Wold. Are all faecal bacteria detected with equal efficiency? A study using next-generation sequencing and quantitative culture of infants' faecal samples. Journal of microbiological methods.
146 Sangam Kandel, Supaphen Sripiboon, Piroon Jenjaroenpun, David W Ussery, Intawat Nookaew, Michael S Robeson, Thidathip Wongsurawat. 16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand. Microbiology Resource Announcements.
147 Thidathip Wongsurawat, Piroon Jenjaroenpun, Panatna Anekwiang, Tantip Arigul, Wichayapat Thongrattana, Azemat Jamshidi‐Parsian, Gunnar Boysen, Prapat Suriyaphol, Bhoom Suktitipat, Prajak Srirabheebhat, Pornsuk Cheunsuchon, Jantima Tanboon, Intawat Nookaew, Sith Sathornsumetee. Exploiting nanopore sequencing for characterization and grading of IDH-mutant gliomas. Brain Pathology.
148 Yan Cheng, Fumou Sun, Daisy V Alapat, Visanu Wanchai, David Mery, Wancheng Guo, Huojun Cao, Yuqi Zhu, Cody Ashby, Michael Anton Bauer, Intawat Nookaew, Eric R Siegel, Jun Ying, Jin-Ran Chen, Dongzheng Gai, Bailu Peng, Hongwei Xu, Clyde Bailey, Samer Al Hadidi, Carolina Schinke, Sharmilan Thanendrarajan, Maurizio Zangari, Marta Chesi, P Leif Bergsagel, Frits van Rhee, Siegfried Janz, Guido Tricot, John D Shaughnessy, Fenghuang Zhan. High NEK2 expression in myeloid progenitors suppresses T cell immunity in multiple myeloma. Cell Reports Medicine.
149 Piroon Jenjaroenpun, Thidathip Wongsurawat, Zulema Udaondo, Courtney Anderson, James Lopez, Meera Mohan, Ruslana Tytarenko, Brian Walker, Intawat Nookaew, David Ussery, Atul Kothari, Se-Ran Jun. Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia. Microbiology Resource Announcements.
150 Sakda Khoomrung, Intawat Nookaew, Partho Sen, Thorunn A Olafsdottir, Josefine Persson, Thomas Moritz, Peter Andersen, Ali M Harandi, Jens Nielsen. Metabolic Profiling and Compound-Class Identification Reveal Alterations in Serum Triglyceride Levels in Mice Immunized with Human Vaccine Adjuvant Alum. Journal of proteome research.
151 Zulema Udaondo, Thidathip Wongsurawat, Piroon Jenjaroenpun, Courtney Anderson, James Lopez, Meera Mohan, Ruslana Tytarenko, Brian Walker, Intawat Nookaew, David Ussery, Atul Kothari, Se-Ran Jun. Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection. Microbiology Resource Announcements.
152 Paul E Abraham, Xiaojing Wang, Priya Ranjan, Intawat Nookaew, Bing Zhang, Gerald A Tuskan, Robert L Hettich. Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa. Journal of Proteome Research.
153 Thidathip Wongsurawat, Piroon Jenjaroenpun, Intawat Nookaew. Direct Sequencing of RNA and RNA Modification Identification Using Nanopore. Yeast Functional Genomics: Methods and Protocols.
154 Taylor Wadley, Sun Hee Moon, Michael S DeMott, Visanu Wanchai, En Huang, Peter C Dedon, Gunnar Boysen, Intawat Nookaew. Nanopore Sequencing for Detection and Characterization of Phosphorothioate Modifications in Native DNA Sequences. Frontiers in microbiology.
155 Taylor D Wadley, Piroon Jenjaroenpun, Thidathip Wongsurawat, David W Ussery, Intawat Nookaew. Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775. Microbiology Resource Announcements.
156 Linda J Larson-Prior, Gohar Azhar, David G Davila, Se-Ran Jun, Aaron S Kemp, Intawat Nookaew, Jeanne Y Wei, Trudy M Wassenaar. Neurobiology of sleep and microbiomics in aging. OBM Neurobiology.
157 Umaporn Uawisetwathana, Watchareewan Jamboonsri, Jakrin Bamrungthai, Prapatsorn Jitthiang, Intawat Nookaew, Nitsara Karoonuthaisiri. Metabolite profiles of brown planthopper-susceptible and resistant rice (Oryza sativa) varieties associated with infestation and mechanical stimuli. Phytochemistry.
158 Zachary J Waldrip, Piroon Jenjaroenpun, Oktawia DeYoung, Intawat Nookaew, Sean D Taverna, Kevin D Raney, Alan J Tackett. Genome-wide Cas9 binding specificity in Saccharomyces cerevisiae. PeerJ.
159 Tayvich Vorapreeda, Chinae Thammarongtham, Thanaporn Palasak, Tanawut Srisuk, Piroon Jenjaroenpun, Thidathip Wongsurawat, Intawat Nookaew, Kobkul Laoteng. Systematic genome analysis of a novel arachidonic acid-producing strain uncovered unique metabolic traits in the production of acetyl-CoA-derived products in Mortierellale fungi. Gene.
160 Trudy M Wassenaar, Se-Ran Jun, Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, Katrina Schlum, Michael R Leuze, David W Ussery. Insights from comparative genomics of the genus Salmonella. Current Topics in Salmonella and Salmonellosis.
161 Line Pedersen, Manja Idorn, Gitte Holmen Olofsson, Intawat Nookaew, Rasmus Hvass Hansen, Helle Hjorth Johannesen, Jürgen C Becker, Britt Lauenborg, Katrine S Pedersen, Christine Dethlefsen, Jens B Nielsen, Julie Gehl, Bente Klarlund Pedersen, Per thor Straten, Pernille Hojman. Exercise suppresses tumor growth through epinephrine- and IL-6-dependent mobilization and redistribution of NK cells. Journal for ImmunoTherapy of Cancer.
162 Wanwipa Vongsangnak, Intawat Nookaew, Margarita Salazar, Jens Nielsen. Analysis of Genome-Wide Coexpression and Coevolution of Aspergillus oryzae and Aspergillus niger. OMICS A Journal of Integrative Biology.
163 Natthaya Chuaypen, Thananya Jinato, Anchalee Avihingsanon, Intawat Nookaew, Yasuhito Tanaka, Pisit Tangkijvanich. Long-term benefit of DAAs on gut dysbiosis and microbial translocation in HCV-infected patients with and without HIV coinfection. Scientific Reports.
164 Duah Alkam, Thidathip Wongsurawat, Intawat Nookaew, Anthony R Richardson, David Ussery, Mark S Smeltzer, Piroon Jenjaroenpun. Is amplification bias consequential in transposon sequencing (TnSeq) assays? A case study with a Staphylococcus aureus TnSeq library subjected to PCR-based and amplification-free enrichment methods. Microbial Genomics.
165 Sara L Svahn, Bagmi Pattanaik, Louise Grahnemo, Saray Gutierrez, Intawat Nookaew, John-Olov Jansson, Maria E Johansson. Spleen proteomics data from high fat diet fed mice. Data in brief.
166 Trudy M Wassenaar, Visanu Wanchai, Duah Alkam, Intawat Nookaew, David W Ussery. Conservation of Two-Component Signal Transduction Systems in E. coli, Salmonella, and Across 100,000 Bacteria of Various Bacterial Phyla. Molecular Mechanisms of Microbial Evolution.
167 Duah Alkam, Thidathip Wongsurawat, Piroon Jenjaroenpun, Skylar Connor, Charlotte Hobbs, Trudy M Wassenaar, Se-Ran Jun, Intawat Nookaew, David Ussery. Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA. Genome Announcements.
168 Guang Hu, Luisa Di Paola, Filippo Pullara, Zhongjie Liang, Intawat Nookaew. Network Proteomics: From Protein Structure to Protein-Protein Interaction. BioMed Research International.
169 Natapol Pornputtapong, Kwanjeera Wanichthanarak, Avlant Nilsson, Intawat Nookaew, Jens Nielsen. A dedicated database system for handling multi-level data in systems biology. Source Code for Biology and Medicine.
170 Intawat Nookaew, Jinhu Xiong, Melda Onal, Cecile Bustamante-Gomez, Visanu Wanchai, Qiang Fu, Ha-Neui Kim, Maria Almeida, Charles A O’Brien Refining the identity of mesenchymal cell types associated with murine periosteal and endosteal bone. Journal of Biological Chemistry.
171 Aaron Warren, Ryan M Porter, Olivia Reyes-Castro, Md Mohsin Ali, Adriana Marques-Carvalho, Ha-Neui Kim, Landon B Gatrell, Ernestina Schipani, Intawat Nookaew, Charles A O’Brien, Roy Morello, Maria Almeida The NAD salvage pathway in mesenchymal cells is indispensable for skeletal development in mice. Nature Communications.
172 Francesco Gatto, Nicola Volpi, Helen Nilsson, Intawat Nookaew, Marco Maruzzo, Anna Roma, Martin E Johansson, Ulrika Stierner, Sven Lundstam, Umberto Basso, Jens Nielsen Glycosaminoglycan profiling in patients' plasma and urine predicts the occurrence of metastatic clear cell renal cell carcinoma (vol 15, pg 1822, 2016). CELL REPORTS.
173 Leif Varemo Wigge, Intawat Nookaew. Platform for Integrative Analysis of Omics data. Vignette.
174 Margareta Jernås, Frida Strömberg Célind, Intawat Nookaew, Karin Mellgren, Hans Wadenvik, Bob Olsson. Normalised immune expression in remission of paediatric ITP. Thrombosis and Haemostasis.
175 Aysha Hussain, Hanna Olausson, Staffan Nilsson, Intawat Nookaew, Sakda Khoomrung, Louise Andersson, Antti Koskela, Juha Tuukkanen, Claes Ohlsson, Agneta Holmäng. Maternal beef and postweaning herring diets increase bone mineral density and strength in mouse offspring. Experimental Biology and Medicine.
176 Manish Adhikari, Japneet Kaur, Hayley M Sabol, Aric Anloague, Sharmin Khan, Noriyoshi Kurihara, Marta Diaz-delCastillo, Christina Møller Andreasen, C Lowry Barnes, Jeffrey B Stambough, Michela Palmieri, Olivia Reyes-Castro, Elena Ambrogini, Maria Almeida, Charles A O’Brien, Intawat Nookaew, Jesus Delgado-Calle. Single-cell Transcriptome Analysis Identifies Senescent Osteocytes as Contributors to Bone Destruction in Breast Cancer Metastasis. Research Square.
177 Syed J Mehdi, Kalyan Ghatak, Wen Ling, Sarah K Johnson, Joshua Epstein, Intawat Nookaew, Maurizio Zangari, Carolina Schinke, Sharmilan Thanendrarajan, Frits van Rhee, Shmuel Yaccoby. Growth and dormancy control of myeloma cells by mesenchymal stem cells. Leukemia Research.
178 Dominique J Laster, Nisreen S Akel, James A Hendrixson, Alicen James, Julie A Crawford, Qiang Fu, Stuart B Berryhill, Jeff D Thostenson, Intawat Nookaew, Charles A O’Brien, Melda Onal. CRISPR interference provides increased cell type-specificity compared to the Cre-loxP system. iScience.
179 Mariah K Taylor, Evan P Williams, Yi Xue, Piroon Jenjaroenpun, Thidathip Wongsurawat, Amanda P Smith, Amber M Smith, Jyothi Parvathareddy, Ying Kong, Peter Vogel, Xueyuan Cao, Walter Reichard, Briana Spruill-Harrell, Amali E Samarasinghe, Intawat Nookaew, Elizabeth A Fitzpatrick, Micholas Dean Smith, Michelle Aranha, Jeremy C Smith, Colleen B Jonsson. Dissecting Phenotype from Genotype with Clinical Isolates of SARS-CoV-2 First Wave Variants. Viruses.
180 Kaleb Z Abram, Zulema Udaondo, Intawat Nookaew, Michael S Robeson, Se-Ran Jun. Genomic Distance-based Rapid Uncovering of Microbial Population Structures (GRUMPS): a reference free genomic data cleaning methodology. bioRxiv.
181 Divyan Chopra, Chenghui Li, Jacob T Painter, Jonathan P Bona, Intawat Nookaew, Bradley C Martin. Characteristics and Network Influence of Providers Involved in the Treatment of Patients With Chronic Back, Neck or Joint Pain in Arkansas. The Journal of Pain.
182 Igor Kortubash, Laura Ewing, Charles Skinner, Intawat Nookaew, Bharathi Avula, Ikhlas Khan, Bill Gurley. Green Tea Extract as a Safe and Effective Dietary Supplement: Lessons Learned from Mice. Current Developments in Nutrition.
183 Igor Kortubash, Charles Skinner, Laura Ewing, Mitchell McGill, Stefanie Kennon-McGill, Intawat Nookaew, Kristy Kutanzi, Charles Quick, Eric Yee, Larry Walker, Mahmoud ElSohly, Bill Gurley. Cannabidiol: From Drug Interaction Potential to Modulation of the Gut Microbiome. Current Developments in Nutrition.
184 Nisha Srinivas, Ryan Tokola, Aravind Mikkilineni, Intawat Nookaew, Michael Leuze, Christopher Boehnen. DNA2FACE: An approach to correlating 3D facial structure and DNA. 2017 IEEE International Joint Conference on Biometrics (IJCB).
185 T Pedersen, Intawat Nookaew, Maria Månsson, David Wayne Ussery. FindMyFriends: A Framework for Fast and Accurate Pangenome Analysis of Thousands of Diverse Genomes. Nature Methods.
186 Sergio Bordel, Intawat Nookaew. Systems Biology or just Biology? A report of the 11th International Conference on Systems Biology. Biotechnology Journal.
187 F Karlsson, Intawat Nookaew, D Petranovic, J Nielsen. Genome scale metabolic models of three bacteria in the human gut. FEBS JOURNAL.
188 Daniel A Acheampong, Piroon Jenjaroenpun, Thidathip Wongsurawat, Alongkorn Kurilung, Yotsawat Pomyen, Sangam Kandel, Pattapon Kunadirek, Natthaya Chuaypen, Kanthida Kusonmano, Intawat Nookaew. CAIM: coverage-based analysis for identification of microbiome. Briefings in Bioinformatics.
189 Kornthara Kawang, Pannaporn Thongsuk, Pornsawan Cholsaktrakool, Songtham Anuntakarun, Pattapon Kunadirek, Natthaya Chuaypen, Sumanee Nilgate, Tanittha Chatsuwan, Intawat Nookaew, Nicha Sangpiromapichai, Voraphoj Nilaratanakul. Sensitivity and specificity of Nanopore sequencing for detecting carbapenem and 3rd-generation cephalosporin-resistant Enterobacteriaceae in urine samples: Real-time simulation with public antimicrobial resistance gene database. Heliyon.
190 Mayumi Nakagawa, Teresa Evans, Milan Bimali, Hannah Coleman, Jasmine Crane, Nadia Darwish, Yong-Chen Lu, Intawat Nookaew, Keanna Marsh, Michael Scott Robeson, Takeo Shibata, David Ussery, William Greenfield. Immune responses in a phase 2 clinical trial of peptide-based therapeutic human papillomavirus vaccine, PepCan, versus Candida adjuvant alone in treating cervical intraepithelial neoplasia 2/3. Journal of Clinical Oncology.
191 Landon Gatrell, Intawat Nookaew, Maria Almeida, Ryan M Porter. Single cell RNA sequencing of mesenchymal populations from murine knees reveals distinct pathways altered in age-associated versus post-traumatic osteoarthritis. Osteoarthritis and Cartilage.
192 J Kaur, M Adhikari, HM Sabol, A Anloague, S Khan, L Barnes, JB Stambough, M Palmieri, O ReyesCastro, E Ambrogini, M Almeida, CA O'Brien, Intawat Nookaew, J Delgado-Calle. Senolytics deplete senescent osteocytes and improve bone health in metastatic breast cancer. Journal of Bone Oncology.
193 Luke Childress, Landon Gatrell, Hong Wu, Intawat Nookaew, Elisabeth Ferreira, Ryan Porter. CHRONIC SENESCENCE CONTRIBUTES TO FIBROCARTILAGE REPAIR IN A PRECLINICAL MODEL OF BONE MARROW STIMULATION. Osteoarthritis and Cartilage.
194 Gohar Azhar, Ambika Verma, Michael S Robeson, Pankaj Patyal, Intawat Nookaew, Shakshi Sharma, Amanda Pangle, Yingni Che, Robert R Wolfe, Jeanne Y Wei. Short-Term Ingestion of Essential Amino Acid Based Nutritional Supplements or Whey Protein Improves the Physical Function of Older Adults Independently of Gut Microbiome. Molecular Nutrition & Food Research.
195 Gohar Azhar, Ambika Verma, Intawat Nookaew, Pankaj Patyal, Shakshi Sharma, Robert Wolfe, Jeanne Wei. EAAS AND WHEY PROTEIN MAY IMPROVE PHYSICAL FUNCTION OF OLDER ADULTS INDEPENDENTLY OF GUT MICROBIOME. Innovation in Aging.
196 Silvia Marino, Nisreen Akel, Shenyang Li, Meloney Cregor, Betiana Perez, Gaston Troncoso, Jomeeka Meeks, Scott Stuart, Amy Sato, Intawat Nookaew, Teresita Bellido. THU346 Repairing Skeletal Deterioration In Diabetes With Bone Anabolic Therapies. Journal of the Endocrine Society.
197 Michela Palmieri, Intawat Nookaew, Maria Jose Schuller-Almeida, Ha-Neui Kim, Teenamol E Jospeh, Stavros C Manolagas, Charles A O'Brien, Elena Ambrogini. OR27-02 The Bone Anabolic Effect Of An Antibody Blocking Oxidized Phospholipids Is Associated With An Increase In Wnt10b In Osteoblasts. Journal of the Endocrine Society.
198 Visanu Wanchai, Piroon Jenjaroenpun, Thangpan Leangapichart, Gerard Arrey, Charles M Burnham, Maria C Trummler, Jesus Delgado-Calle, Birgitte Regenberg, Intawat Nookaew. CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences (vol 23, bbac422, 2022). BRIEFINGS IN BIOINFORMATICS.
199 Silvia Marino, Nisreen Akel, Shenyang Li, Meloney Cregor, Meghan Jones, Betiana Perez, Gaston Troncoso, Jomeeka Meeks, Scott Stuart, Amy Y Sato, Intawat Nookaew, Teresita Bellido. Author Correction: Reversal of the diabetic bone signature with anabolic therapies in mice. Bone research.
200 Ryan C Riddle, Alexander Rauch, Satoru Otsuru, Kenneth E White, R Agoro, Intawat Nookaew, ML Noonan, YG Marambio, S Liu, W Chang, H Gao. Single cell cortical bone transcriptomics define novel osteolineage gene sets altered in chronic kidney disease. Methods: To this end, flow cytometry and scRNAseq were performed on long bone cells from Sost-cre/Ai9+ mice, and pure osteolineage transcriptomes were identified, including novel osteocyte-specific gene sets.
201 Intawat Nookaew, Jinhu Xiong, Melda Onal, Haneui Kim, Visanu Wanchai, Maria Almeida, Charles O'Brien. Cell types targeted by Osx1-Cre and Dmp1-Cre defined by single-cell transcriptome analysis. JOURNAL OF BONE AND MINERAL RESEARCH.
202 Mariah K Taylor, Evan P Williams, Thidathip Wongsurawat, Piroon Jenjaroenpun, Intawat Nookaew, Colleen B Jonsson. Corrigendum: Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species. Frontiers in Cellular and Infection Microbiology.
203 G Boysen, Intawat Nookaew. Current and Future Methodology for Quantitation and Site-Specific Mapping the Location of DNA Adducts. Toxics 2022, 10, 45.
204 Francesco Gatto, Nicola Volpi, Helen Nilsson, Intawat Nookaew, Marco Maruzzo, Anna Roma, Martin E Johansson, Ulrika Stierner, Sven Lundstam, Umberto Basso, Jens Nielsen. Erratum: Glycosaminoglycan profiling in patients’ plasma and urine predicts the occurrence of metastatic clear cell renal cell carcinoma (Cell Reports (2016) 15(8) (1822–1836), (S2211124716305009), (10.1016/j.celrep.2016.04.056)). Cell Reports.
205 Intawat Nookaew. Uncovering RNA and DNA Modifications from Native Sequences. CSBio'20: Proceedings of the Eleventh International Conference on Computational Systems-Biology and Bioinformatics.
206 Xuehua Li, Jacob Kordsmeier, Ha-neui Kim, Intawat Nookaew, Jinhu Xiong. Mechanical stimulation promotes mitochondria function via Piezol. JOURNAL OF BONE AND MINERAL RESEARCH.
207 S Kandel, S Sripiboon, P Jenjaroenpun, DW Ussery, Intawat Nookaew, MS Robeson. 16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand.
208 Visanu Wanchai, Intawat Nookaew, David W Ussery. ProdMX: Rapid query and analysis of protein functional domain based on compressed sparse matrices. Computational and Structural Biotechnology Journal.
209 Thidathip Wongsurawat, Arundhati Gupta, Piroon Jenjaroenpun, Shana Owens, James Craig Forrest, Intawat Nookaew. Author Correction: R-loop-forming Sequences Analysis in Thousands of Viral Genomes Identify A New Common Element in Herpesviruses. Scientific Reports.
210 Kanchana Sittikankaew, Wirulda Pootakham, Chutima Sonthirod, Duangjai Sangsrakru, Thippawan Yoocha, Jutatip Khudet, Intawat Nookaew, Umaporn Uawisetwathana, Wanilada Rungrassamee, Nitsara Karoonuthaisiri. Author Correction: Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp. Scientific Reports.
211 Xuehua Li, Li Han, Intawat Nookaew, Erin Mannen, Maria Almeida, Jinhu Xiong, Matthew Silva. Stimulation of Piezo1 by Mechanical Loading Promotes Bone Anabolism. JOURNAL OF BONE AND MINERAL RESEARCH.
212 Thidathip Wongsurawat, Piroon Jejaroenpun, Annick DeLoose, David Ussery, Duah Alkam, JD Day, Intawat Nookaew, Analiz Rodriguez. PATH-05. RAPID SIMULTANEOUS IDH MUTATION AND MGMT METHYLATION STATUS ASSESSMENT IN GLIOMA PATIENTS USING CRISPR-Cas9-TARGETED NANOPORE SEQUENCING. Neuro-oncology.
213 Piroon Jejaroenpun, Thidathip Wongsurawat, Annick DeLoose, David Ussery, Intawat Nookaew, JD Day, Analiz Rodriguez. GENE-18. TRANSCRIPTOME-WIDE ANALYSIS USING NANOPORE THIRD GENERATION SEQUENCING IN A RAT GLIOBLASTOMA MODEL: PROOF OF PRINCIPLE. Neuro-oncology.
214 Samir V Jenkins, Kieng B Vang, Allen Gies, Robert J Griffin, Se-Ran Jun, Intawat Nookaew, Ruud Petrus Dings. Abstract 2823: Sample storage conditions alter microbiome profiles - its potential relevance for cancer patients undergoing fecal microbial transplants. Cancer Research.
215 Leif Varemo Wigge, Intawat Nookaew, Maintainer Leif Varemo Wigge, Ruud Petrus Dings. Package ‘piano’.
216 Brian D Piccolo, James L Graham, Kimber L Stanhope, Intawat Nookaew, Kelly E Mercer, Sree V Chintapalli, Umesh D Wankhade, Kartik Shankar, Peter J Havel, Sean H Adams. Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model. American Journal of Physiology-Endocrinology and Metabolism.
217 Ha-Neui Kim, Intawat Nookaew, Nukhet Aykin-Burns, Kim Krager, Li Han, Robert Jilka, Stavros Manolagas, Maria Almeida. Estrogen Attenuates Complex I Activity and Stimulates the Mitochondrial Apoptotic Death Pathway in Osteoclast Progenitors. JOURNAL OF BONE AND MINERAL RESEARCH.
218 Jorge Jo Kamimoto, Sandra Susanibar, Meera Mohan, Piroon Jenjaroenpun, Krishnan Gayathri, Juan Carlos Rico, Mary J Burgess, Ruslana Tytarenko, Nicole Emery, Eric Rosenbaum, Brian Walker, Intawat Nookaew, Atul Kothari. 487. Severity and Clinical Outcomes of Clostridium difficile Infection Based on Toxin B Assay Results. Open Forum Infectious Diseases .
219 Francesco Gatto, Kyle A Blum, Marco Maruzzo, Helén Nilsson, Intawat Nookaew, Anna Roma, Mazyar Ghaanat, Francesca Maccari, Fabio Galeotti, James Hsieh, Martin E Johansson, Nicola Volpi, Umberto Basso, Ulrika Stierner, Sven Lundstam, A Ari Hakimi, Nielsen Jens. Glycosaminoglycan profiling as a novel pan-cancer minimally invasive systems biomarker. Atti del Convegno.
220 Brian D Piccolo, James L Graham, Umesh Wankhade, Intawat Nookaew, Kelly E Mercer, Kartik Shankar, Peter J Havel, Sean H Adams. Associations among the Cecal Microbiome and Bacterially-Derived Cecal Xeno-Metabolites during Diabetes Progression in the UC Davis Type 2 Diabetes Rat Model. DIABETES.
221 Brian Piccolo, James Graham, Umesh Wankhade, Intawat Nookaew, Kartik Shankar, Peter Havel, Sean Adams. Host diabetes status is the major regulator of gut microbiome in the UCD-T2DM Rat. The FASEB Journal.
222 Suresh Poudel Suresh Poudel, RJ Giannone, M, Jr Rodriguez, Babu Raman Babu Raman, MZ Martin, NL Engle, JR Mielenz, Intawat Nookaew, SD Brown, TJ Tschaplinski, D Ussery, RL Hettich. Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass. Biotechnology for Biofuels.
223 Jun SeRan Jun SeRan, TM Wassenaar, V Wanchai, P Patumcharoenpol, Intawat Nookaew, DW Ussery. Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us? BMC Bioinformatics.
224 D Alkam, T Wongsurawat, P Jenjaroenpun, S Connor, C Hobbs, TM Wassenaar, SR Jun, Intawat Nookaew, D Ussery. Three complete genome sequences of genotype G mumps virus from the 2016 outbreak in Arkansas, USA. Genome Announc 5: e00555-17.
225 Vladimir Espinosa Angarica, Antonio Del Sol, Intawat Nookaew, Vladimir A Kuznetsov, Lawrence W Stanton Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons
226 Intawat Nookaew. Network Biology Preface. NETWORK BIOLOGY.
227 Francesco Gatto, Intawat Nookaew, Helen Nilsson, Marco Maruzzo, Anna Roma, Martin E Johansson, Ulrika Stierner, Sven Lundstam, Nicola Volpi, Umberto Basso, Jens Nielsen. Changes in glycosaminoglycan biosynthesis regulation in clear cell renal cell carcinoma are detectable in plasma and urine of metastatic patients. BJU INTERNATIONAL.
228 M Axelsson, M Jernas, Intawat Nookaew, C Malmestrom, H Wadenvik, J Lycke, B Olsson. Platelet-derived genes are altered in MS patients. MULTIPLE SCLEROSIS JOURNAL.
229 J Nielsen, S Bordel, Intawat Nookaew. Genome-Scale Metabolic Models: A Link between Bioinformatics and Systems Biology. Elsevier.
230 M Jernas, Intawat Nookaew, F Celind, K Mellgren, H Wadenvik, B Olsson. T-CELL GENE EXPRESSION PROFILING SUGGESTS THAT" ACUTE" AND CHRONIC ITP ARE TWO SEPARATE DISEASE ENTITIES. HAEMATOLOGICA.
231 M Jernas, C Malmestrom, Intawat Nookaew, H Wadenvik, J Lycke, B Olsson. The impact of rituximab therapy in multiple sclerosis on cerebrospinal fluid cell gene expression.
232 Leif Väremo, Jens Nielsen, Intawat Nookaew. SUPPLEMENTARY METHODS.
233 I Jernas, Intawat Nookaew, H Wadenvik, B Olsson. MICRORNA REGULATE IMMUNOLOGICAL PATHWAYS IN T-CELLS IN IMMUNE THROMBOCYTOPENIA (ITP). haematologica.
234 T Osterlund, Intawat Nookaew, J Nielsen. Reconstruction of a comprehensive Saccharomyces cerevisiae genome-scale metabolic and regulatory network. FEBS JOURNAL.
235 T Osterlund, Intawat Nookaew, J Nielsen. Reconstruction of a comprehensiveSaccharomyces cerevisiaegenome-scale metabolic and regulatory network: B1. 22. THE FEBS JOURNAL.
236 M Papini, Intawat Nookaew, V Siewers, J Nielsen. Engineering of the fungal phosphoketolase pathway in the yeast Saccharomyces cerevisiae, effects on glycerol overproduction and flux distributions. FEBS JOURNAL.
237 S Lundin, Intawat Nookaew, K Worah, S Wang, S Pettersson, H Sjovall, Jens B Nielsen. Transcriptional progression of atrophic gastritis development in humans.
238 Intawat Nookaew. Unveiling regulatory and control mechanisms of yeast lipid metabolism by systems biology approach. King Mongkut''s University of Technology Thonburi. KMUTT Library.
239 Michael Christopher Jewett, Intawat Nookaew, Francisco A Pizarro, Lars I Hellgren, Eduardo Agosin, Jens Nielsen. Exploring Biosynthetic Control in Lipid Metabolism.
240 J Dominique, Nisreen S Laster, James A Akel, Intawat Nookaew, A Charles, Melda O’Brien. CRISPR interference provides increased cell type-specificity compared to the Cre-loxP system.
241 Rasmus Agren, Sergio Bordel, Adil Mardinoglu, Natapol Pornputtapong, Intawat Nookaew, Jens Nielsen. postheadericon Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT.
242 Shandar Ahmad, Judith Y Altarejos, Nandita Bachhawat, Pantelis G Bagos, Sanghamitra Bandyopadhyay, Anthony J Baucum, Jon Bohlin, James Cai, Yimei Cai, Yamini Chand, Bo Chen, Ming Chen, Moreno Colaiacovo, Murray Cox, Andrew Dalby UK, Shishan Deng, Zsuzsanna Dosztányi, Jinggui Fang, Xiangdong Fang, David EK Ferrier UK, Yuriy Fofanov, John A Fuerst, Andrzej Galat, Oxana V Galzitskaya, Ge Gao, Xin Gao, Yu Gao, Daniel Gautheret, Xavier Gidrol, Jun Gojobori, Paola Gratteri, Michael Gromiha, Hai Hu, Elżbieta K Jagusztyn-Krynicka, Taijiao Jiang, Vinayak Kapatral, Michael G Katze, Olga Koksharova, Ponmalai Kolandaivel, Anil Kumar, Paweł Łabaj, Kevin AW Lee, Hongxing Lei, Vincenzo Lettera, Shuangding Li, Xia Li, Wen-chang Lin, Yen-Han Lin, Jiang Liu, Xiong Liu, Yutao Liu, Chunlin Long, Huu-Sheng Lur, Ana Maldonado-Alconada, Long Mao, Rogério Margis, Pooja Mishra, Pradeep Kumar Naik, Olivier Namy, Intawat Nookaew, Akifumi Oda, Antonio Costa de Oliveira, Ronald Pearlman, Zhaohua Peng, Victoria M Perreau, Clemens Karl Peterbauer, V Phan, Mihai Pop, Pramod C Rath, Simon Rayner, Andreas Richter, Pål Sætrom. Acknowledgements to GPB Reviewers.
243 Subazini Thankaswamy Kosalai, Jens Nielsen, Intawat Nookaew. Comparison of short read aligners with Galaxy.
244 Intawat Nookaew. Network Proteomics: From Protein Structure to Protein-Protein Interaction.
245 Intawat Nookaew, Marta Papini, Natapol Pornputtpong, Gionata Scalcinati, Linn Fagerberg, Matthias Uhlén, Jens Nielsen. Supplementary tables, figures and information for.
246 Hussain A, Olausson H, Nilsson S, Intawat Nookaew, Khoomrung S, Andersson L, Koskela A, Tuukkanen J, Ohlsson C, Holmäng A. Maternal beef and postweaning herring diets increase bone mineral density and strength in mouse offspring. Exp Biol Med (Maywood).
247 Thorunn A. Olafsdottir, Madelene Lindqvist, Intawat Nookaew, Peter Andersen, Jeroen Maertzdorf, Josefine Persson, Dennis Christensen, Yuan Zhang, Jenna Anderson, Sakda Khoomrung, Partho Sen, Else Marie Agger, Rhea Coler, Darrick Carter, Andreas Meinke, Rino Rappuoli, Stefan H. E. Kaufmann, Steven G. Reed, Ali M. Harandi. Comparative Systems Analyses Reveal Molecular Signatures of Clinically tested Vaccine Adjuvants. Scientific Reports .
248 Daniel A Acheampong, Piroon Jenjaroenpun, Thidathip Wongsurawat, Alongkorn Kurilung, Yotsawat Pomyen, Sangam Kandel, Pattapon Kunadirek, Natthaya Chuaypen, Kanthida Kusonmano, Intawat Nookaew. CAIM: coverage-based analysis for identification of microbiome. Briefings in Bioinformatics.