{"id":6313,"date":"2026-08-27T09:12:51","date_gmt":"2026-08-27T02:12:51","guid":{"rendered":"https:\/\/www2.si.mahidol.ac.th\/department\/biochemistry\/?p=6313"},"modified":"2026-08-27T09:14:41","modified_gmt":"2026-08-27T02:14:41","slug":"exploiting-nanopore-sequencing-for-characterization-and-grading-of-idh-mutant-gliomas-2","status":"publish","type":"post","link":"https:\/\/www2.si.mahidol.ac.th\/department\/biochemistry\/exploiting-nanopore-sequencing-for-characterization-and-grading-of-idh-mutant-gliomas-2\/","title":{"rendered":"Exploiting nanopore sequencing for characterization and grading of IDH-mutant gliomas"},"content":{"rendered":"<p>Thidathip Wongsurawat, Piroon Jenjaroenpun, Panatna Anekwiang, Tantip Arigul, Wichayapat Thongrattana, Azemat Jamshidi-Parsian, Gunnar Boysen, Prapat Suriyaphol, <strong>Bhoom Suktitipat<\/strong>, Prajak Srirabheebhat, Pornsuk Cheunsuchon, Jantima Tanboon, Intawat Nookaew, Sith Sathornsumetee<\/p>\n<h2 class=\"title\">Abstract<\/h2>\n<div id=\"eng-abstract\" class=\"abstract-content selected\">\n<div class=\"title\">\n<p>The 2021 WHO Classification of Central Nervous System Tumors recommended evaluation of cyclin-dependent kinase inhibitor 2A\/B (CDKN2A\/B) deletion in addition to codeletion of 1p\/19q to characterize IDH-mutant gliomas. Here, we demonstrated the use of a nanopore-based copy-number variation sequencing (nCNV-seq) approach to simultaneously identify deletions of CDKN2A\/B and 1p\/19q. The nCNV-seq approach was initially evaluated on three distinct glioma cell lines and then applied to 19 IDH-mutant gliomas (8 astrocytomas and 11 oligodendrogliomas) from patients. The whole-arm 1p\/19q codeletion was detected in all oligodendrogliomas with high concordance among nCNV-seq, FISH, DNA methylation profiling, and whole-genome sequencing. For the CDKN2A\/B deletion, nCNV-seq detected the loss in both astrocytoma and oligodendroglioma, with strong correlation with the CNV profiles derived from whole-genome sequencing (Pearson correlation (r) = 0.95, P &lt; 2.2 \u00d7 10-16 to r = 0.99, P &lt; 2.2 \u00d7 10-16 ) and methylome profiling. Furthermore, nCNV-seq can differentiate between homozygous and hemizygous deletions of CDKN2A\/B. Taken together, nCNV-seq holds promise as a new, alternative approach for a rapid and simultaneous detection of the molecular signatures of IDH-mutant gliomas without capital expenditure for a sequencer.<\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37574201\/\">https:\/\/pubmed.ncbi.nlm.nih.gov\/37574201\/<\/a><\/p>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Thidathip Wongsurawat, Piroon Jenjaroenpun, Panatna Ane [&#8230;]\n","protected":false},"author":6,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[3],"tags":[],"class_list":["post-6313","post","type-post","status-publish","format-standard","hentry","category-3"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v28.5 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Exploiting nanopore sequencing for characterization and grading of IDH-mutant gliomas - 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